Publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2025

  1. Nature Commun
    Editor’s Highlight
    SIMVI disentangles intrinsic and spatial-induced cellular states in spatial omics data
    Mingze Dong, David Su, Harriet Kluger, and 2 more authors
    Nature Communications (Featured Article), 2025
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2024

  1. In submission
    Scaling deep identifiable models enables zero-shot characterization of single-cell biological states
    Mingze Dong, Kriti Agrawal, Rong Fan, and 3 more authors
    bioRxiv, 2024
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  2. Under revision
    Pertpy: an end-to-end framework for perturbation analysis
    Lukas Heumos, Yuge Ji, Lilly May, and 25 more authors
    bioRxiv, 2024
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2023

  1. Nature Methods
    Causal identification of single-cell experimental perturbation effects with CINEMA-OT
    Mingze Dong, Bao Wang, Jessica Wei, and 8 more authors
    Nature Methods, 2023
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  2. ICML
    Towards Understanding and Reducing Graph Structural Noise for GNNs
    Mingze Dong, and Yuval Kluger
    Proceedings of the 40th International Conference on Machine Learning, 2023
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  3. Nature
    Spatial epigenome–transcriptome co-profiling of mammalian tissues
    Di Zhang, Yanxiang Deng, Petra Kukanja, and 8 more authors
    Nature, 2023
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2022

  1. ICLR
    Spotlight
    GEASS: Neural causal feature selection for high-dimensional biological data
    Mingze Dong, and Yuval Kluger
    The Eleventh International Conference on Learning Representations (Spotlight), 2022
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